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* common/n*: add and update Korean translation * Update pages.ko/common/nudoku.md Co-authored-by: Sebastiaan Speck <12570668+sebastiaanspeck@users.noreply.github.com> * Update pages.ko/common/ncmpcpp.md Co-authored-by: Chooooo <contact@choo.ooo> * Update pages.ko/common/neofetch.md Co-authored-by: Chooooo <contact@choo.ooo> * Update pages.ko/common/nextflow.md Co-authored-by: Chooooo <contact@choo.ooo> * Update pages.ko/common/nslookup.md Co-authored-by: Chooooo <contact@choo.ooo> * Update pages.ko/common/netserver.md Co-authored-by: Chooooo <contact@choo.ooo> * Update pages.ko/common/nuclei.md Co-authored-by: Chooooo <contact@choo.ooo> * Update pages.ko/common/nuclei.md Co-authored-by: Chooooo <contact@choo.ooo> * Update pages.ko/common/nslookup.md Co-authored-by: Chooooo <contact@choo.ooo> * Update pages.ko/common/nextflow.md Co-authored-by: Chooooo <contact@choo.ooo> * Update pages.ko/common/nvm.fish.md Co-authored-by: Chooooo <contact@choo.ooo> --------- Co-authored-by: Sebastiaan Speck <12570668+sebastiaanspeck@users.noreply.github.com> Co-authored-by: Chooooo <contact@choo.ooo>
32 lines
1.4 KiB
Markdown
32 lines
1.4 KiB
Markdown
# nextclade
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> 바이러스 유전체 정렬, 계통 할당 및 품질 검사를 위한 생물정보학 도구.
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> 더 많은 정보: <https://docs.nextstrain.org/projects/nextclade/en/stable/user/nextclade-cli/index.html>.
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- 사용자 제공 [r]eference에 시퀀스를 정렬하고, 정렬 결과를 파일로 출력:
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`nextclade run {{경로/대상/시퀀스.fa}} -r {{경로/대상/레퍼런스.fa}} -o {{경로/대상/정렬결과.fa}}`
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- 최신 [d]ataset을 자동으로 다운로드하여 [t]SV 보고서 생성:
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`nextclade run {{경로/대상/fasta}} -d {{데이터셋_이름}} -t {{경로/대상/보고서.tsv}}`
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- 사용 가능한 모든 데이터셋 나열:
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`nextclade dataset list`
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- 최신 SARS-CoV-2 데이터셋 다운로드:
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`nextclade dataset get --name sars-cov-2 --output-dir {{경로/대상/폴더}}`
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- 다운로드한 [D]ataset을 사용하여 모든 [O]utputs 생성:
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`nextclade run -D {{경로/대상/데이터셋_폴더}} -O {{경로/대상/출력_폴더}} {{경로/대상/시퀀스.fasta}}`
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- 여러 파일에서 실행:
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`nextclade run -d {{데이터셋_이름}} -t {{경로/대상/출력_tsv}} -- {{경로/대상/입력_fasta_1 경로/대상/입력_fasta_2 ...}}`
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- 시퀀스가 정렬되지 않을 경우 역상보 시도:
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`nextclade run --retry-reverse-complement -d {{데이터셋_이름}} -t {{경로/대상/출력_tsv}} {{경로/대상/입력_fasta}}`
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