diff --git a/core/org.eclipse.cdt.ui/src/org/eclipse/cdt/internal/ui/refactoring/includes/HeaderSubstitutor.java b/core/org.eclipse.cdt.ui/src/org/eclipse/cdt/internal/ui/refactoring/includes/HeaderSubstitutor.java
index 92166263d8c..c7a12210b5a 100644
--- a/core/org.eclipse.cdt.ui/src/org/eclipse/cdt/internal/ui/refactoring/includes/HeaderSubstitutor.java
+++ b/core/org.eclipse.cdt.ui/src/org/eclipse/cdt/internal/ui/refactoring/includes/HeaderSubstitutor.java
@@ -53,6 +53,8 @@ public class HeaderSubstitutor {
 					fIncludeMaps[1].addAllMappings(map.getOptionalSubstitutionMap());
 				}
 			}
+			fIncludeMaps[0].transitivelyClose();
+			fIncludeMaps[1].transitivelyClose();
 		}
 
 		fSymbolExportMap = new SymbolExportMap();