Warning cleanup.

codan/org.eclipse.cdt.codan.core/.settings/.api_filters

@@ -1,17 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<component id="org.eclipse.cdt.codan.core" version="2">
-    <resource path="src/org/eclipse/cdt/codan/core/model/AbstractProblemLocation.java" type="org.eclipse.cdt.codan.core.model.AbstractProblemLocation">
-        <filter comment="getFile method should return IResource not IFile according to interface. Don't know how it compiled before like that..." id="338792546">
-            <message_arguments>
-                <message_argument value="org.eclipse.cdt.codan.core.model.AbstractProblemLocation"/>
-                <message_argument value="getFile()"/>
-            </message_arguments>
-        </filter>
-        <filter comment="upgrade file attribute to IResource from IFile - it is backward compatible" id="388161617">
-            <message_arguments>
-                <message_argument value="org.eclipse.cdt.codan.core.model.AbstractProblemLocation"/>
-                <message_argument value="file"/>
-            </message_arguments>
-        </filter>
-    </resource>
-</component>

codan/org.eclipse.cdt.codan.core/META-INF/MANIFEST.MF

@@ -10,7 +10,7 @@ Require-Bundle: org.eclipse.core.runtime,
 Bundle-ActivationPolicy: lazy
 Bundle-RequiredExecutionEnvironment: JavaSE-1.6
 Export-Package: org.eclipse.cdt.codan.core,
- org.eclipse.cdt.codan.core.externaltool;x-friends:="org.eclipse.cdt.codan.ui,org.eclipse.cdt.codan.core.test",
+ org.eclipse.cdt.codan.core.externaltool,
  org.eclipse.cdt.codan.core.model,
  org.eclipse.cdt.codan.core.model.cfg;x-friends:="org.eclipse.cdt.codan.core.cxx,org.eclipse.cdt.codan.checkers",
  org.eclipse.cdt.codan.core.param,
@@ -21,4 +21,8 @@ Export-Package: org.eclipse.cdt.codan.core,
    org.eclipse.cdt.codan.ui",
  org.eclipse.cdt.codan.internal.core.cfg;x-friends:="org.eclipse.cdt.codan.core.cxx",
  org.eclipse.cdt.codan.internal.core.externaltool;x-friends:="org.eclipse.cdt.codan.core.test",
- org.eclipse.cdt.codan.internal.core.model;x-friends:="org.eclipse.cdt.codan.core.cxx,org.eclipse.cdt.codan.core.test,org.eclipse.cdt.codan.ui"
+ org.eclipse.cdt.codan.internal.core.model;
+  x-friends:="org.eclipse.cdt.codan.core.cxx,
+   org.eclipse.cdt.codan.core.test,
+   org.eclipse.cdt.codan.ui,
+   org.eclipse.cdt.codan.ui.cxx"

codan/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/AbstractChecker.java

@@ -161,7 +161,7 @@ public abstract class AbstractChecker implements IChecker {
 	 * @return instance of IProblemLocation
 	 */
 	protected IProblemLocation createProblemLocation(IFile file, int startChar, int endChar) {
-		return getRuntime().getProblemLocationFactory().createProblemLocation(file, startChar, endChar);
+		return getRuntime().getProblemLocationFactory().createProblemLocation(file, startChar, endChar, -1);
 	}
 
 	/**

codan/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblemLocationFactory.java

@@ -45,7 +45,10 @@ public interface IProblemLocationFactory {
 	 *        - end char of the problem in the file, is zero-relative and
 	 *        exclusive.
 	 * @return instance of IProblemLocation
+	 *
+	 * @deprecated Use {@link #createProblemLocation(IFile, int, int, int)} instead.
 	 */
+	@Deprecated
 	public IProblemLocation createProblemLocation(IFile file, int startChar, int endChar);
 
 	/**
@@ -55,11 +58,10 @@ public interface IProblemLocationFactory {
 	 * @param startChar - start char of the problem in the file, is
 	 *        zero-relative
 	 * @param endChar - end char of the problem in the file, is zero-relative
-	 *        and
-	 *        exclusive.
+	 *        and exclusive.
 	 *
 	 * @param line
-	 *        - start line number (for visualisation purposes)
+	 *        - start line number (for visualization purposes)
 	 * @return instance of IProblemLocation
 	 */
 	public IProblemLocation createProblemLocation(IFile astFile, int startChar, int endChar, int line);

codan/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblemReporterSessionPersistent.java

@@ -14,7 +14,7 @@ import org.eclipse.core.resources.IResource;
 
 /**
  * IProblemReporterPersistent - interface to report problems, which are
- * persistent, ex. markers. Also this object has context of checker and
+ * persistent, e.g. markers. Also this object has context of checker and
  * current resource, which allows to manage markers better - i.e. instead of
  * deleting replace them when needed, and queue markers for insertion instead
  * of add right away.
@@ -30,9 +30,9 @@ import org.eclipse.core.resources.IResource;
 public interface IProblemReporterSessionPersistent extends IProblemReporter {
 	/**
 	 * Deletes all problems associated with session resource and session checker.
-	 * If "all" is true also delete all problems associated with workspace (and
-	 * session checker).
 	 *
+	 * @param all If <code>true</code> the method also deletes all problems associated with
+	 * workspace (and session checker).
 	 */
 	public void deleteProblems(boolean all);
 
@@ -51,12 +51,11 @@ public interface IProblemReporterSessionPersistent extends IProblemReporter {
 	IResource getResource();
 
 	/**
-	 * Create an instance of the object. This is a bit ugly since implemented has
-	 * to combine the object itself and factory to this object.
+	 * Creates a problem reporter.
 	 *
 	 * @param resource
 	 * @param checker
-	 * @return
+	 * @return the created reporter
 	 * @since 2.0
 	 */
 	public IProblemReporterSessionPersistent createReporter(IResource resource, IChecker checker);

codan/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/param/FileScopeProblemPreference.java

@@ -10,12 +10,6 @@
  *******************************************************************************/
 package org.eclipse.cdt.codan.core.param;
 
-import java.io.IOException;
-import java.io.StreamTokenizer;
-import java.util.ArrayList;
-import java.util.Collections;
-import java.util.List;
-
 import org.eclipse.cdt.codan.core.Messages;
 import org.eclipse.cdt.codan.internal.core.CharOperation;
 import org.eclipse.core.resources.IProject;
@@ -26,6 +20,12 @@ import org.eclipse.core.resources.ResourcesPlugin;
 import org.eclipse.core.runtime.IPath;
 import org.eclipse.core.runtime.Path;
 
+import java.io.IOException;
+import java.io.StreamTokenizer;
+import java.util.ArrayList;
+import java.util.Collections;
+import java.util.List;
+
 /**
  * Custom preference for resource scope
  *
@@ -174,14 +174,14 @@ public class FileScopeProblemPreference extends AbstractProblemPreference {
 		checkChar(tokenizer, '>');
 		ArrayList<IPath> list = new ArrayList<IPath>();
 		int token;
-		int index = 0;
 		try {
 			checkChar(tokenizer, '(');
 			token = tokenizer.nextToken();
-			if (token != ')')
+			if (token != ')') {
 				tokenizer.pushBack();
-			else
+			} else {
 				return Collections.emptyList();
+			}
 			while (true) {
 				token = tokenizer.nextToken();
 				if (tokenizer.sval == null)
@@ -192,7 +192,6 @@ public class FileScopeProblemPreference extends AbstractProblemPreference {
 					break;
 				tokenizer.pushBack();
 				checkChar(tokenizer, ',');
-				index++;
 			}
 		} catch (IOException e) {
 			throw new IllegalArgumentException(e);

codan/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/CharOperation.java

@@ -1975,15 +1975,15 @@ public final class CharOperation {
 	 */
 	public static final int occurencesOf(char toBeFound, char[] array) {
 		int count = 0;
-		for (char element : array)
+		for (char element : array) {
 			if (toBeFound == element)
 				count++;
+		}
 		return count;
 	}
 
 	/**
-	 * Answers the number of occurrences of the given character in the given
-	 * array starting
+	 * Answers the number of occurrences of the given character in the given array starting
 	 * at the given index, 0 if any.
 	 *
 	 * <br>
@@ -2006,16 +2006,12 @@ public final class CharOperation {
 	 * </li>
 	 * </ol>
 	 *
-	 * @param toBeFound
-	 *        the given character
-	 * @param array
-	 *        the given array
-	 * @return the number of occurrences of the given character in the given
-	 *         array, 0 if any
-	 * @exception NullPointerException
-	 *            if array is null
-	 * @exception ArrayIndexOutOfBoundsException
-	 *            if start is lower than 0
+	 * @param toBeFound the given character
+	 * @param array the given array
+	 * @param start the start position for the search
+	 * @return the number of occurrences of the given character in the given array, or 0 if any
+	 * @exception NullPointerException if array is null
+	 * @exception ArrayIndexOutOfBoundsException if start is lower than 0
 	 */
 	public static final int occurencesOf(char toBeFound, char[] array, int start) {
 		int count = 0;

codan/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/cfg/DecisionNode.java

@@ -10,24 +10,21 @@
  *******************************************************************************/
 package org.eclipse.cdt.codan.internal.core.cfg;
 
-import java.util.ArrayList;
-import java.util.List;
-
 import org.eclipse.cdt.codan.core.model.cfg.IBasicBlock;
 import org.eclipse.cdt.codan.core.model.cfg.IBranchNode;
 import org.eclipse.cdt.codan.core.model.cfg.IConnectorNode;
 import org.eclipse.cdt.codan.core.model.cfg.IDecisionNode;
 
+import java.util.ArrayList;
+import java.util.List;
+
 /**
- * @see {@link IDecisionNode}
+ * @see IDecisionNode
  */
 public class DecisionNode extends AbstractSingleIncomingNode implements IDecisionNode {
 	private List<IBasicBlock> next = new ArrayList<IBasicBlock>(2);
 	private IConnectorNode conn;
 
-	/**
-	 * @param prev
-	 */
 	protected DecisionNode() {
 		super();
 	}
@@ -38,33 +35,16 @@ public class DecisionNode extends AbstractSingleIncomingNode implements IDecisio
 		next.add(cnode);
 	}
 
-	/*
-	 * (non-Javadoc)
-	 * 
-	 * @seeorg.eclipse.cdt.codan.provisional.core.model.cfg.IBasicBlock#
-	 * getOutgoingIterator()
-	 */
 	@Override
 	public IBasicBlock[] getOutgoingNodes() {
 		return next.toArray(new IBasicBlock[next.size()]);
 	}
 
-	/*
-	 * (non-Javadoc)
-	 * 
-	 * @see org.eclipse.cdt.codan.core.model.cfg.IBasicBlock#getOutgoingSize ()
-	 */
 	@Override
 	public int getOutgoingSize() {
 		return next.size();
 	}
 
-	/*
-	 * (non-Javadoc)
-	 * 
-	 * @seeorg.eclipse.cdt.codan.provisional.core.model.cfg.IDecisionNode#
-	 * getConnectionNode()
-	 */
 	@Override
 	public IConnectorNode getMergeNode() {
 		return conn;

codan/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/model/ProblemLocationFactory.java

@@ -16,37 +16,19 @@ import org.eclipse.core.resources.IFile;
 
 /**
  * Factory class that allows to create problem locations
- * 
  */
 public class ProblemLocationFactory implements IProblemLocationFactory {
-	/*
-	 * (non-Javadoc)
-	 * 
-	 * @seeorg.eclipse.cdt.codan.core.model.IProblemLocationFactory#
-	 * createProblemLocation(org.eclipse.core.resources.IFile, int)
-	 */
 	@Override
 	public IProblemLocation createProblemLocation(IFile file, int line) {
 		return new CodanProblemLocation(file, line);
 	}
 
-	/*
-	 * (non-Javadoc)
-	 * 
-	 * @seeorg.eclipse.cdt.codan.core.model.IProblemLocationFactory#
-	 * createProblemLocation(org.eclipse.core.resources.IFile, int, int)
-	 */
 	@Override
+	@Deprecated
 	public IProblemLocation createProblemLocation(IFile file, int startChar, int endChar) {
 		return new CodanProblemLocation(file, startChar, endChar);
 	}
 
-	/*
-	 * (non-Javadoc)
-	 * 
-	 * @seeorg.eclipse.cdt.codan.core.model.IProblemLocationFactory#
-	 * createProblemLocation(org.eclipse.core.resources.IFile, int, int, int)
-	 */
 	@Override
 	public IProblemLocation createProblemLocation(IFile file, int startChar, int endChar, int line) {
 		return new CodanProblemLocation(file, startChar, endChar, line);

codan/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/model/ProblemProfile.java

@@ -10,9 +10,6 @@
  *******************************************************************************/
 package org.eclipse.cdt.codan.internal.core.model;
 
-import java.util.ArrayList;
-import java.util.Collection;
-
 import org.eclipse.cdt.codan.core.model.IProblem;
 import org.eclipse.cdt.codan.core.model.IProblemCategory;
 import org.eclipse.cdt.codan.core.model.IProblemProfile;
@@ -22,9 +19,11 @@ import org.eclipse.core.runtime.ISafeRunnable;
 import org.eclipse.core.runtime.ListenerList;
 import org.eclipse.core.runtime.SafeRunner;
 
+import java.util.ArrayList;
+import java.util.Collection;
+
 /**
  * @author Alena
- * 
  */
 public class ProblemProfile implements IProblemProfile, Cloneable {
 	private CodanProblemCategory rootCategory;
@@ -38,23 +37,11 @@ public class ProblemProfile implements IProblemProfile, Cloneable {
 		rootCategory.setProfile(this);
 	}
 
-	/*
-	 * (non-Javadoc)
-	 * 
-	 * @see
-	 * org.eclipse.cdt.codan.core.model.IProblemProfile#getProblem(java.lang
-	 * .String)
-	 */
 	@Override
 	public IProblem findProblem(String id) {
 		return CodanProblemCategory.findProblem(getRoot(), id);
 	}
 
-	/*
-	 * (non-Javadoc)
-	 * 
-	 * @see org.eclipse.cdt.codan.core.model.IProblemProfile#getProblems()
-	 */
 	@Override
 	public IProblem[] getProblems() {
 		Collection<IProblem> problems = new ArrayList<IProblem>();
@@ -62,10 +49,6 @@ public class ProblemProfile implements IProblemProfile, Cloneable {
 		return problems.toArray(new IProblem[problems.size()]);
 	}
 
-	/**
-	 * @param root
-	 * @param problems
-	 */
 	protected void collectProblems(IProblemCategory parent, Collection<IProblem> problems) {
 		Object[] children = parent.getChildren();
 		for (Object object : children) {
@@ -94,11 +77,6 @@ public class ProblemProfile implements IProblemProfile, Cloneable {
 		return CodanProblemCategory.findCategory(getRoot(), id);
 	}
 
-	/*
-	 * (non-Javadoc)
-	 * 
-	 * @see java.lang.Object#clone()
-	 */
 	@Override
 	public Object clone() {
 		try {
@@ -115,38 +93,21 @@ public class ProblemProfile implements IProblemProfile, Cloneable {
 		}
 	}
 
-	/**
-	 * @param p
-	 * @param cat
-	 */
 	public void addCategory(IProblemCategory category, IProblemCategory parent) {
 		((CodanProblemCategory) parent).addChild(category);
 	}
 
-	/*
-	 * (non-Javadoc)
-	 * 
-	 * @see org.eclipse.cdt.codan.core.model.IProblemElement#getProfile()
-	 */
 	@Override
 	public IProblemProfile getProfile() {
 		return this;
 	}
 
-	/*
-	 * (non-Javadoc)
-	 * 
-	 * @see org.eclipse.cdt.codan.core.model.IProblemElement#getParentCategory()
-	 */
 	@Override
 	public IProblemCategory getParentCategory() {
 		return getRoot();
 	}
 	private ListenerList preferenceChangeListeners;
 
-	/**
-	 * @param listener
-	 */
 	@Override
 	public void addProfileChangeListener(IProblemProfileChangeListener listener) {
 		if (preferenceChangeListeners == null)
@@ -154,9 +115,6 @@ public class ProblemProfile implements IProblemProfile, Cloneable {
 		preferenceChangeListeners.add(listener);
 	}
 
-	/**
-	 * @param listener
-	 */
 	@Override
 	public void removeProfileChangeListener(IProblemProfileChangeListener listener) {
 		if (preferenceChangeListeners == null)
@@ -166,14 +124,15 @@ public class ProblemProfile implements IProblemProfile, Cloneable {
 			preferenceChangeListeners = null;
 	}
 
-	/*
+	/**
 	 * Convenience method for notifying preference change listeners.
 	 */
 	protected void fireProfileChangeEvent(String key, Object oldValue, Object newValue) {
 		if (preferenceChangeListeners == null)
 			return;
 		Object[] listeners = preferenceChangeListeners.getListeners();
-		final ProblemProfileChangeEvent event = new ProblemProfileChangeEvent(this, this.resource, key, oldValue, newValue);
+		final ProblemProfileChangeEvent event =
+				new ProblemProfileChangeEvent(this, this.resource, key, oldValue, newValue);
 		for (int i = 0; i < listeners.length; i++) {
 			final IProblemProfileChangeListener listener = (IProblemProfileChangeListener) listeners[i];
 			ISafeRunnable job = new ISafeRunnable() {
@@ -191,11 +150,6 @@ public class ProblemProfile implements IProblemProfile, Cloneable {
 		}
 	}
 
-	/*
-	 * (non-Javadoc)
-	 * 
-	 * @see org.eclipse.cdt.codan.core.model.IProblemProfile#getResource()
-	 */
 	@Override
 	public Object getResource() {
 		return resource;

codan/org.eclipse.cdt.codan.ui.cxx/.project

@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <projectDescription>
-	<name>org.eclipse.cdt.codan.internal.ui.cxx</name>
+	<name>org.eclipse.cdt.codan.ui.cxx</name>
 	<comment></comment>
 	<projects>
 	</projects>

codan/org.eclipse.cdt.codan.ui.cxx/src/org/eclipse/cdt/codan/ui/cxx/externaltool/AbstractCxxExternalToolBasedChecker.java

@@ -38,6 +38,8 @@ import org.eclipse.ui.editors.text.TextEditor;
  * external tools cannot see unsaved changes.
  *
  * @author alruiz@google.com (Alex Ruiz)
+ * 
+ * @since 3.0
  */
 public abstract class AbstractCxxExternalToolBasedChecker extends AbstractExternalToolBasedChecker {
 	/**